Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
THCA rs2236699 chr18:13826007 G/T 1.27E-5 501 31.42 33.4 50 KM Plot
THCA rs2238599 chr19:2140009 C/T 0.000132 488 32.9 31.68 31.47 KM Plot
THCA rs2238601 chr19:2140374 G/T 0.000135 489 32.9 31.68 31.45 KM Plot
THCA rs2238604 chr19:2144758 T/C 5.7E-5 487 32.03 31.87 31.47 KM Plot
THCA rs2238609 chr19:2146629 C/T 3.88E-5 488 32.47 31.68 31.02 KM Plot
THCA rs2238610 chr19:2146852 T/C 3.99E-5 487 32.03 31.68 31.02 KM Plot
THCA rs2238611 chr19:2149503 C/T 2.23E-5 491 32.9 31.53 31.03 KM Plot
THCA rs2238612 chr19:2149694 C/T 3.82E-5 503 30.18 31.77 32.03 KM Plot
THCA rs2253963 chr14:62082596 A/C 3.87E-5 503 31.4 39.88 11.03 KM Plot
THCA rs2274278 chr13:50126382 G/A 1.68E-5 501 34.52 29.37 31.8 KM Plot
THCA rs2274284 chr13:50129615 A/G 1.68E-5 501 34.52 29.37 31.8 KM Plot
THCA rs2279771 chr5:157170986 G/A 0.000136 500 32.1 28.23 31.13 KM Plot
THCA rs2292881 chr2:238434249 C/T 2.99E-8 503 31.67 31.4 34.1 KM Plot
THCA rs2292883 chr2:238443000 C/T 3.87E-8 496 31.6 31.4 34.1 KM Plot
THCA rs2305541 chr2:234354320 C/T 9.4E-7 501 31.75 28.33 26.45 KM Plot